Identification of 4CL Genes in Desert Poplars and Their Changes in Expression in Response to Salt Stress.
Identifieur interne : 001D02 ( Main/Exploration ); précédent : 001D01; suivant : 001D03Identification of 4CL Genes in Desert Poplars and Their Changes in Expression in Response to Salt Stress.
Auteurs : Cai-Hua Zhang [République populaire de Chine] ; Tao Ma [République populaire de Chine] ; Wen-Chun Luo [République populaire de Chine] ; Jian-Mei Xu [République populaire de Chine] ; Jian-Quan Liu [République populaire de Chine] ; Dong-Shi Wan [République populaire de Chine]Source :
- Genes [ 2073-4425 ] ; 2015.
Abstract
4-Coumarate:CoA ligase (4CL) genes are critical for the biosynthesis of plant phenylpropanoids. Here we identified 20 4CL genes in the genomes of two desert poplars (Populus euphratica and P. pruinosa) and salt-sensitive congener (P. trichocarpa), but 12 in Salix suchowensis (Salix willow). Phylogenetic analyses clustered all Salicaceae 4CL genes into two clades, and one of them (corresponding to the 4CL-like clade from Arabidopsis) showed signals of adaptive evolution, with more genes retained in Populus than Salix and Arabidopsis. We also found that 4CL12 (in 4CL-like clade) showed positive selection along the two desert poplar lineages. Transcriptional profiling analyses indicated that the expression of 4CL2, 4CL11, and 4CL12 changed significantly in one or both desert poplars in response to salt stress compared to that of in P. trichocarpa. Our results suggest that the evolution of the 4CL genes may have contributed to the development of salt tolerance in the two desert poplars.
DOI: 10.3390/genes6030901
PubMed: 26393655
PubMed Central: PMC4584335
Affiliations:
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sortKey="Zhang, Cai Hua" sort="Zhang, Cai Hua" uniqKey="Zhang C" first="Cai-Hua" last="Zhang">Cai-Hua Zhang</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. chzhang13@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Ma, Tao" sort="Ma, Tao" uniqKey="Ma T" first="Tao" last="Ma">Tao Ma</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. matao.yz@gmail.com.</nlm:affiliation><country 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Mei" sort="Xu, Jian Mei" uniqKey="Xu J" first="Jian-Mei" last="Xu">Jian-Mei Xu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. xujianmei131412@126.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Jian Quan" sort="Liu, Jian Quan" uniqKey="Liu J" first="Jian-Quan" last="Liu">Jian-Quan Liu</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. liujq@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author><author><name sortKey="Wan, Dong Shi" sort="Wan, Dong Shi" uniqKey="Wan D" first="Dong-Shi" last="Wan">Dong-Shi Wan</name><affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. wandsh@lzu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000</wicri:regionArea><wicri:noRegion>Lanzhou 730000</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genes</title><idno type="ISSN">2073-4425</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">4-Coumarate:CoA ligase (4CL) genes are critical for the biosynthesis of plant phenylpropanoids. Here we identified 20 4CL genes in the genomes of two desert poplars (Populus euphratica and P. pruinosa) and salt-sensitive congener (P. trichocarpa), but 12 in Salix suchowensis (Salix willow). Phylogenetic analyses clustered all Salicaceae 4CL genes into two clades, and one of them (corresponding to the 4CL-like clade from Arabidopsis) showed signals of adaptive evolution, with more genes retained in Populus than Salix and Arabidopsis. We also found that 4CL12 (in 4CL-like clade) showed positive selection along the two desert poplar lineages. Transcriptional profiling analyses indicated that the expression of 4CL2, 4CL11, and 4CL12 changed significantly in one or both desert poplars in response to salt stress compared to that of in P. trichocarpa. Our results suggest that the evolution of the 4CL genes may have contributed to the development of salt tolerance in the two desert poplars. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">26393655</PMID><DateCompleted><Year>2015</Year><Month>09</Month><Day>23</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2073-4425</ISSN><JournalIssue CitedMedium="Print"><Volume>6</Volume><Issue>3</Issue><PubDate><Year>2015</Year><Month>Sep</Month><Day>18</Day></PubDate></JournalIssue><Title>Genes</Title><ISOAbbreviation>Genes (Basel)</ISOAbbreviation></Journal><ArticleTitle>Identification of 4CL Genes in Desert Poplars and Their Changes in Expression in Response to Salt Stress.</ArticleTitle><Pagination><MedlinePgn>901-17</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3390/genes6030901</ELocationID><Abstract><AbstractText>4-Coumarate:CoA ligase (4CL) genes are critical for the biosynthesis of plant phenylpropanoids. Here we identified 20 4CL genes in the genomes of two desert poplars (Populus euphratica and P. pruinosa) and salt-sensitive congener (P. trichocarpa), but 12 in Salix suchowensis (Salix willow). Phylogenetic analyses clustered all Salicaceae 4CL genes into two clades, and one of them (corresponding to the 4CL-like clade from Arabidopsis) showed signals of adaptive evolution, with more genes retained in Populus than Salix and Arabidopsis. We also found that 4CL12 (in 4CL-like clade) showed positive selection along the two desert poplar lineages. Transcriptional profiling analyses indicated that the expression of 4CL2, 4CL11, and 4CL12 changed significantly in one or both desert poplars in response to salt stress compared to that of in P. trichocarpa. Our results suggest that the evolution of the 4CL genes may have contributed to the development of salt tolerance in the two desert poplars. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Cai-Hua</ForeName><Initials>CH</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. chzhang13@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ma</LastName><ForeName>Tao</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. matao.yz@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luo</LastName><ForeName>Wen-Chun</ForeName><Initials>WC</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. wchluo2011@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Jian-Mei</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. xujianmei131412@126.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Jian-Quan</ForeName><Initials>JQ</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. liujq@lzu.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wan</LastName><ForeName>Dong-Shi</ForeName><Initials>DS</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Grassland Agro-Ecosystem, School of Life Sciences, Lanzhou University, No.222, Tianshui Southern Road, Lanzhou 730000, China. wandsh@lzu.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>09</Month><Day>18</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Genes (Basel)</MedlineTA><NlmUniqueID>101551097</NlmUniqueID><ISSNLinking>2073-4425</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">4CL gene family</Keyword><Keyword MajorTopicYN="N">adaptive evolution</Keyword><Keyword MajorTopicYN="N">desert poplars</Keyword><Keyword MajorTopicYN="N">expression divergence</Keyword><Keyword MajorTopicYN="N">salt stress</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>07</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2015</Year><Month>08</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>09</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>9</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>9</Month><Day>24</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>9</Month><Day>24</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26393655</ArticleId><ArticleId IdType="pii">genes6030901</ArticleId><ArticleId 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Mei" sort="Xu, Jian Mei" uniqKey="Xu J" first="Jian-Mei" last="Xu">Jian-Mei Xu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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